Two Factor with ExternalAuth

So I posted on the short urls and got it working but it did not resolve my
issue. Allow me to explain in full.
I have authentication outsourced to PAM. I have PAM using RSA passwords.
So they are one time passwords.
Now every time I go to a link or allow it to auto-refresh every 2 minutes I
get prompted for my password. Is this a cookie issue?
Thanks everyone I really appreciate it.